XML for Bioinformatics
Springer; 1 edition | ISBN: 0387230289 | 304 pages | March 15, 2005 | PDF | 3 Mb

XML for Bioinformatics aims to provide biologists, software engineers, and bioinformatics professionals with a comprehensive introduction to XML and current XML applications in bioinformatics. The book will assume no background in XML, and take readers from basic to intermediate XML concepts. Core topics will include: fundamentals of XML, creating XML grammars, web services via SOAP, and parsing XML documents in Perl and Java.

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If you’ve ever been curious about any of the multitude of internet acronyms, the web technologies they represent, and how they can benefit you, this book is a great place to start. This book covers all the necessary topics to get up and running with HTML, XHTML, and CSS while offering readers a guide to modern, standards-based design. Key tasks covered in the book include setting up a Web page, reducing image resolution, creating radio buttons, adding a hit counter, adding an embedded sound, adding content from other sites such as integrating a blog and creating an RSS feed. Large topics are broken into smaller, more approachable sub-topics that are clearly explained on two pages eliminating the back and forth page flipping required in other references. Arranged so that skills build progressively throughout the book coupled with bold page headers it is simple to flip through and easily find any section or topic you are looking for. Understandable with straightforward terms that avoid intimidating and unexplained jargon, this is a book that will benefit complete novices and advanced users alike.

While primarily focused on the technologies outlined in the title, this book goes on to provide tips on integrating with Google, Flickr, social bookmark sites and even creating and implementing RSS feeds. Rest assured, each of these technologies is explained with the benefits of each outlined. A serious resource that quickly and concisely gets to the point, this book helps you gain real skills that will have you online in short order. Best of all, you can be confident that you are doing so the right way.

HTML, XHTML, and CSS: Your visual blueprint™ for designing effective Web pages offers visual learners a solid reference that employs straight forward examples to teach you to create and design Web pages with impact. “Apply It” and “Extra” sidebars highlight useful tips and high-resolution screen shots clearly illustrate each task while succinct explanations walk you through the examples. The associated website contains all the needed code to learn HTML.

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JavaScript Bible, Gold Edition
Danny Goodman | ISBN: 0764547186 | PDF | 2177 pages | English | 33 MB

The JavaScript Bible, Gold Edition covers the new powerful functionality JavaScript gains with the release of the new fifth generation revisions of Internet Explorer and Netscape Communicator. The book includes all the great content included in the JavaScript Bible, 4th Edition, an international bestseller, plus over 400 pages of new material. The Gold Bible features essential new JavaScript information, additional ready -to-use JavaScript applications and scores of additional JavaScripts and Web page routines. This book will bring programmers and non-technical professionals, including casual programmers and scripters, painlessly up to speed on all aspects of mastering JavaScript. Key topics include programming fundamentals, JavaScript language elements and how to use them effectively, and how to easily and efficiently add powerful new functionality to HTML documents and Java applets.

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Special Edition Using XML (2nd Edition) (Special Edition Using)
Que | ISBN: 078972748X | 2002-07-26 | PDF | 864 pages | 3 Mb

Special Edition Using XML, Second Edition gives developers a formal introduction to XML technology, starting with in-depth coverage of basic syntax and fundamental “pieces” of XML, including DTDs, Schemas, and Namespaces. The authors then cover various applications of XML, including transforming and displaying XML documents using CSS and XSL, locating data within XML documents using Xpath, Xlink and Xpointer, programming XML with SAX or DOM, including XML in Java or .NET applications, XML Scripting with Perl, XHTML and WML for presentation on traditional and hand-held Web browsers, and querying data or documents with Xquery. The final chapters cover technologies related to XML such as SVG, SMIL, and RDF, focusing on the practical features developers can put to use today.

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An Architects and Developers Guide to BPEL and BPEL4WS
Architecture, syntax, development and composition of Business Processes and Services using BPEL
Advanced BPEL features such as compensation, concurrency, links, scopes, events, dynamic partner links, and correlations
Oracle BPEL Process Manager and BPEL Designer Microsoft BizTalk Server as a BPEL server

In Detail

Web services provide the basic technical platform required for application interoperability. They do not, however, provide higher level control, such as which web services need to be invoked, which operations should be called and in what sequence. Nor do they provide ways to describe the semantics of interfaces, the workflows, or e-business processes. BPEL is the missing link to assemble and integrate web services into a real business process BPEL4WS standardizes process automation between web services. This applies both within the enterprise, where BPEL4WS is used to integrate previously isolated systems, and between enterprises, where BPEL4WS enables easier and more effective integration with business partners. In providing a standard descriptive structure BPEL4WS enables enterprises to define their business processes during the design phase. Wider business benefits can flow from this through business process optimization, reengineering, and the selection of most appropriate processes . Supported by major vendors — including BEA, Hewlett-Packard, IBM, Microsoft, Novell, Oracle, SAP, Sun, and others — BPEL4WS is becoming the accepted standard for business process management.

This book provides detailed coverage of BPEL4WS, its syntax, and where, and how, it is used. It begins with an overview of web services, showing both the foundation of, and need for, BPEL. The web services orchestration stack is explained, including standards such as WS-Security, WS-Coordination, WS-Transaction, WS-Addressing, and others. The BPEL language itself is explained in detail, with Code snippets and complete examples illustrating both its syntax and typical construction. Having covered BPEL itself, the book then goes on to show BPEL is used in context. by providing an overview of major BPEL4WS servers. It covers the Oracle BPEL Process Manager and Microsoft BizTalk Server 2004 in detail, and shows how to write BPEL4WS solutions using these servers.

What you will learn from this book?

Chapter 1 provides a detailed introduction to BPEL and Service Oriented Architecture (SOA). It discusses business processes and their automation, explains the role of BPEL, web services, and Enterprise Service Buses (ESB) in SOA, provides insight into business process composition with BPEL, explains the most important features, compares BPEL to other specifications, provides an overview of BPEL servers, and discusses the future of BPEL.

Chapter 2 provides a detailed introduction to the Web Services Technology Stack. It discusses the important standards and specifications for using BPEL and implementing SOA with web services, such as WS-Security, WS-Addressing, WS-Coordination, WS-AtomicTransaction, WS-BusinessActivity, WS-Reliable Messaging, etc.

Chapter 3 discusses the composition of web services with BPEL. The chapter introduces the core concepts of BPEL and explains how to define synchronous and asynchronous business processes with BPEL. The reader gets familiar with BPEL process structure, partner links, sequential and parallel service invocation, variables, conditions, etc.

Chapter 4 goes deeper into the BPEL specification and covers advanced features for modeling complex business processes. Advanced activities, scopes, serialization, fault handing, compensations, event handling, correlation sets, concurrent activities and links, process lifecycle, and dynamic partner links are covered in detail.

Chapter 5 explains how to use the Oracle BPEL Process Manager for deploying and executing business processes defined in BPEL. It describes the server architecture, tools, features, and common approaches for managing and debugging BPEL processes. The chapter also looks at graphical development of BPEL processes using Oracle BPEL Designer for JDeveloper and for Eclipse.

Chapter 6 takes a detailed look at the advanced features of the Oracle BPEL Process Manager including extension functions, dynamic parallel flows, Web Services Invocation Framework, Java embedding, Notification service, Workflow service, Identity service, and Oracle BPEL Server APIs.

Chapter 7 discusses MS BizTalk Server 2004 and its support for BPEL. It explains how to develop business processes in BizTalk and export them to BPEL. It also explains how to import BPEL processes into BizTalk and how to use the Orchestration Designer tool to define processes graphically, and compares BizTalk and BPEL constructs.

Appendix A provides a syntax reference for BPEL version 1.1. The appendix covers standard BPEL activities and elements, functions, attributes, and faults.

Who this book is written for?

This book is aimed at architects and developers in the design, implementation, and integration phases of advanced information systems and e-business solutions, developing business processes and dealing with the issues of composition, orchestration, transactions, coordination, and security. The book presumes knowledge of XML and web services, web services development (either on J2EE or .NET), and multi-tier architecture

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The Extensible Markup Language is changing the way that information is being stored and exchanged. It is also changing the very way that we think about data. XML Unleashed allows you to unlock this new power and get you well on your way towards developing XML applications and systems that enable your most important business processes, or your simplest visions for data representation and exchange. Written for those already familiar with many of the concepts of XML, but still not sure how to make best use of the technologies, this book helps you become a more advanced user of XML. This book covers all the necessary topics from the basics of Document Type Definitions (DTDs) to the more advanced topics in XML database integration and the semantic web. This book is designed to be the only XML book that the reader will ever need on their shelf. XML is a standard and has become the common thread facilitating very different computer applications communicate by categorizing and tagging the data, reading, interpreting, sorting and linking the results. Within this book you will find coverage of important existing and emerging XML Standards as well as many varied and popular implementations of XML in this 21st century.We include WSDL, UDDI, SVG, ebXML Microsoft’s .NET, which is the world’s largest XML implementation to date and the Semantic Web which is just now being articulated.

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